U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TE-Jun18-88

Identifiers
BioSample: SAMEA112176116; SRA: ERS14285957
Organism
Cyclobacteriaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2018-06-11
environmental mediumfreshwater lake biome
geographic locationSwitzerland
isolation sourcelake water
project namePRJEB35640
sample nameTE-Jun18-88
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112176116
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-11-30T12:18:09Z
INSDC last update2022-11-30T12:18:09Z
INSDC statuspublic
Submitter IdTE-Jun18-88
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score67.54
completeness softwarecheckm
contamination score1.02
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextfreshwater lake biome
metagenomic sourcelake water metagenome
sample derived fromERS11684480
taxonomic identity markermulti-marker approach
Description

TE-Jun18-88

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112176116
ID:
31963722

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center