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ERS14236933

Identifiers
BioSample: SAMEA112147794; SRA: ERS14257702
Organism
Rickettsiales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; unclassified Rickettsiales
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2019-05-24
environmental mediummesocosm
geographic locationCzech Republic
isolation sourcemesocosm experiment
project namePRJEB56877
sample nameJR-MC-F-240519-55
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112147794
INSDC center aliasBiology Centre of the Czech Academy of Sciences, Institute of Hydrobiology
INSDC center namebiology centre of the czech academy of sciences, institute of hydrobiology
INSDC first public2022-11-30T00:19:03Z
INSDC last update2022-11-30T00:19:03Z
INSDC statuspublic
Submitter IdJR-MC-F-240519-55
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score61.71
completeness softwareCheckM
contamination score1.11
geographic location (latitude)48.6189
geographic location (longitude)14.6731
local environmental contextmesocosm
metagenomic sourceaquatic metagenome
sample derived fromERS14236933
taxonomic identity markermulti-marker approach
Description

JR-MC-F-240519-55: Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales

BioProject
PRJEB56877 Mesocosm experiment
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112147794
ID:
31959940

BioProject Nucleotide

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