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ERS14236927

Identifiers
BioSample: SAMEA112147382; SRA: ERS14257290
Organism
Opitutia bacterium
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Opitutia; unclassified Opitutia
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2019-05-10
environmental mediumfreshwater lake biome
geographic locationCzech Republic
isolation sourcelake water
project namePRJEB56877
sample nameJR-DAM-100519-27
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112147382
INSDC center aliasBiology Centre of the Czech Academy of Sciences, Institute of Hydrobiology
INSDC center namebiology centre of the czech academy of sciences, institute of hydrobiology
INSDC first public2022-11-30T00:19:01Z
INSDC last update2022-11-30T00:19:01Z
INSDC statuspublic
Submitter IdJR-DAM-100519-27
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score87.61
completeness softwareCheckM
contamination score2.03
geographic location (latitude)48.6189
geographic location (longitude)14.6731
local environmental contextfreshwater lake biome
metagenomic sourcelake water metagenome
sample derived fromERS14236927
taxonomic identity markermulti-marker approach
Description

JR-DAM-100519-27: Bacteria; Verrucomicrobia; Opitutae

BioProject
PRJEB56877 Mesocosm experiment
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112147382
ID:
31959530

BioProject Nucleotide

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