| broad-scale environmental context | Chicken digestive system |
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| collection date | not provided |
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| environmental medium | Ileum |
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| geographic location | Spain |
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| investigation type | metagenome-assembled genome |
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| isolation source | chicken gut metagenome |
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| project name | HoloFood Chicken -- MAG Catalogue data |
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| sample name | ERR4647all_bin.25_MetaWRAP_v1.1_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-03-22 |
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| ENA-LAST-UPDATE | 2023-03-22 |
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| External Id | SAMEA111535105 |
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| INSDC center alias | UNIVERSITY OF COPENHAGEN |
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| INSDC center name | UNIVERSITY OF COPENHAGEN |
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| INSDC first public | 2023-03-22T12:23:12Z |
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| INSDC last update | 2023-03-22T12:23:12Z |
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| INSDC status | public |
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| Submitter Id | ERR4647all_bin.25_MetaWRAP_v1.1_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | MEGAHIT_v1.2.9 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | MetaWRAP v1.1 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 60.97 |
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| completeness software | CheckM |
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| contamination score | 0.87 |
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| geographic location (latitude) | 41.170048 |
|---|
| geographic location (longitude) | 1.168491 |
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| local environmental context | Digestive tube |
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| metagenomic source | chicken gut metagenome |
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| sample derived from | SAMEA7368185,SAMEA7368180,SAMEA7368178,SAMEA7368184,SAMEA7368182,SAMEA7368179,SAMEA7368183,SAMEA7368186,SAMEA7368188,SAMEA7368177,SAMEA7368181,SAMEA7368187 |
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| scientific_name | uncultured Ruaniaceae bacterium |
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| sequencing method | DNBSEQ-G400 |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Micrococcales;f__Ruaniaceae;g__Haloactinobacterium;s__ |
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| taxonomic identity marker | multi-marker approach |
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