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Metagenome-assembled genome: ERR4647716_bin.6_MetaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA110744402; SRA: ERS12841927
Organism
uncultured Facklamia sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Facklamia; environmental samples
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-10-16
environmental mediumIleum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameHoloFood Chicken -- MAG Catalogue data
sample nameERR4647716_bin.6_MetaWRAP_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-22
ENA-LAST-UPDATE2023-03-22
External IdSAMEA110744402
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:23:03Z
INSDC last update2023-03-22T12:23:03Z
INSDC statuspublic
Submitter IdERR4647716_bin.6_MetaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.14
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score86.91
completeness softwareCheckM
contamination score1.05
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA7368187
scientific_nameuncultured Facklamia sp.
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Facklamia;s__Facklamia tabacinasalis
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4647716 of study ERP122587.

BioProject
PRJEB55375 HoloFood Chicken Ileum MAG catalogue
Retrieve all samples from this project

Submission
EBI; 2023-03-24
Accession:
SAMEA110744402
ID:
33882212

BioProject Nucleotide

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