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Metagenome-assembled genome: ERR4836957_bin.5_MetaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA110703400; SRA: ERS12800937
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-09-17
environmental mediumCecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameHoloFood Chicken -- Prior Chicken
sample nameERR4836957_bin.5_MetaWRAP_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-22
ENA-LAST-UPDATE2023-03-22
External IdSAMEA110703400
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:23:00Z
INSDC last update2023-03-22T12:23:00Z
INSDC statuspublic
Submitter IdERR4836957_bin.5_MetaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.14
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score90.12
completeness softwareCheckM
contamination score0.03
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA7571838
scientific_nameuncultured Clostridia bacterium
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4836957 of study ERP125074.

BioProject
PRJEB55374 HoloFood Chicken Caecum MAG catalogue
Retrieve all samples from this project

Submission
EBI; 2023-03-24
Accession:
SAMEA110703400
ID:
33882111

BioProject Nucleotide

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