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Metagenome-assembled genome: ERR4835868_bin.3_MetaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA110703225; SRA: ERS12800762
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-02-11
environmental mediumCecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameHoloFood Chicken -- Prior Chicken
sample nameERR4835868_bin.3_MetaWRAP_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-22
ENA-LAST-UPDATE2023-03-22
External IdSAMEA110703225
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:22:59Z
INSDC last update2023-03-22T12:22:59Z
INSDC statuspublic
Submitter IdERR4835868_bin.3_MetaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarenot provided
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score91.45
completeness softwareCheckM
contamination score0.83
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA7571789
scientific_nameuncultured Clostridia bacterium
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4835868 of study ERP125074.

BioProject
PRJEB55374 HoloFood Chicken Caecum MAG catalogue
Retrieve all samples from this project

Submission
EBI; 2023-03-24
Accession:
SAMEA110703225
ID:
33881936

BioProject Nucleotide

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