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Metagenome-assembled genome: ERR4336989_bin.2_MetaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA110702507; SRA: ERS12800044
Organism
uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-10-15
environmental mediumCecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameHoloFood Chicken -- MAG Catalogue data
sample nameERR4336989_bin.2_MetaWRAP_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-22
ENA-LAST-UPDATE2023-03-22
External IdSAMEA110702507
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:23:01Z
INSDC last update2023-03-22T12:23:01Z
INSDC statuspublic
Submitter IdERR4336989_bin.2_MetaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.14
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score69.18
completeness softwareCheckM
contamination score2.7
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA7025277
scientific_nameuncultured Lachnospiraceae bacterium
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4336989 of study ERP122587.

BioProject
PRJEB55374 HoloFood Chicken Caecum MAG catalogue
Retrieve all samples from this project

Submission
EBI; 2023-03-24
Accession:
SAMEA110702507
ID:
33881501

BioProject Nucleotide

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