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Metagenome-assembled genome: ERR4304456_bin.84_MetaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA110702461; SRA: ERS12799998
Organism
uncultured Lactobacillus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; environmental samples
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-09-30
environmental mediumCecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameHoloFood Chicken -- MAG Catalogue data
sample nameERR4304456_bin.84_MetaWRAP_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-22
ENA-LAST-UPDATE2023-03-22
External IdSAMEA110702461
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:22:59Z
INSDC last update2023-03-22T12:22:59Z
INSDC statuspublic
Submitter IdERR4304456_bin.84_MetaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.14
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score89.11
completeness softwareCheckM
contamination score0.0
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA7025274
scientific_nameuncultured Lactobacillus sp.
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus reuteri
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4304456 of study ERP122587.

BioProject
PRJEB55374 HoloFood Chicken Caecum MAG catalogue
Retrieve all samples from this project

Submission
EBI; 2023-03-24
Accession:
SAMEA110702461
ID:
33881455

BioProject Nucleotide

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