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ERS6344558

Identifiers
BioSample: SAMEA110380453; SRA: ERS12478649
Organism
Singulisphaera sp. GP187
cellular organisms; Bacteria; Pseudomonadati; PVC group; Planctomycetota; Planctomycetia; Isosphaerales; Isosphaeraceae; Singulisphaera; unclassified Singulisphaera
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-10-25
environmental mediumfresh water
geographic locationAustria
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameTrE-25oct19-120
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110380453
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T16:26:48Z
INSDC last update2022-07-22T16:26:48Z
INSDC statuspublic
Submitter IdTrE-25oct19-120
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score72.4
completeness softwarecheckm
contamination score2.27
geographic location (latitude)47.851155
geographic location (longitude)13.805195
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344558
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Planctomycetes assembled from Lake Traunsee

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110380453
ID:
29917259

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