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ERS6344557

Identifiers
BioSample: SAMEA110380431; SRA: ERS12478627
Organism
Thermoflexus hugenholtzii JAD2
cellular organisms; Bacteria; Bacillati; Chloroflexota; Thermoflexia; Thermoflexales; Thermoflexaceae; Thermoflexus; Thermoflexus hugenholtzii
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-11-11
environmental mediumfresh water
geographic locationSwitzerland
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameTH-11nov19-82
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110380431
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T00:26:12Z
INSDC last update2022-07-22T00:26:12Z
INSDC statuspublic
Submitter IdTH-11nov19-82
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score83.17
completeness softwarecheckm
contamination score1.49
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344557
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Chloroflexi assembled from Lake Thun

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110380431
ID:
29917237

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