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ERS6344557

Identifiers
BioSample: SAMEA110380412; SRA: ERS12478608
Organism
Klebsiella pneumoniae
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-11-11
environmental mediumfresh water
geographic locationSwitzerland
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameTH-11nov19-195
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110380412
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T00:26:11Z
INSDC last update2022-07-22T00:26:11Z
INSDC statuspublic
Submitter IdTH-11nov19-195
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score93.84
completeness softwarecheckm
contamination score0.84
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344557
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Proteobacteria assembled from Lake Thun

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110380412
ID:
29917218

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