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ERS6344556

Identifiers
BioSample: SAMEA110380349; SRA: ERS12478545
Organism
Synechococcus sp. UW140
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-11-11
environmental mediumfresh water
geographic locationSwitzerland
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameTE-11nov19-272
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110380349
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T00:26:10Z
INSDC last update2022-07-22T00:26:10Z
INSDC statuspublic
Submitter IdTE-11nov19-272
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score75.89
completeness softwarecheckm
contamination score2.99
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344556
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Cyanobacteria assembled from Lake Thun

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110380349
ID:
29917155

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