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ERS6344556

Identifiers
BioSample: SAMEA110380345; SRA: ERS12478541
Organism
Sediminibacterium ginsengisoli
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; Sediminibacterium
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-11-11
environmental mediumfresh water
geographic locationSwitzerland
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameTE-11nov19-236
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110380345
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T16:26:48Z
INSDC last update2022-07-22T16:26:48Z
INSDC statuspublic
Submitter IdTE-11nov19-236
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score95.07
completeness softwarecheckm
contamination score1.48
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344556
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteroidetes assembled from Lake Thun

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110380345
ID:
29917151

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