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ERS4065088

Identifiers
BioSample: SAMEA110380207; SRA: ERS12478403
Organism
Rhodoluna limnophila
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Luna cluster; Luna-1 subcluster; Rhodoluna
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-07-30
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMsE-30jul19-3
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-25
ENA-LAST-UPDATE2022-07-25
External IdSAMEA110380207
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-25T12:45:16Z
INSDC last update2022-07-25T12:45:16Z
INSDC statuspublic
Submitter IdMsE-30jul19-3
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score77.62
completeness softwarecheckm
contamination score1.95
geographic location (latitude)50.539746
geographic location (longitude)13.645342
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS4065088
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Actinobacteria assembled from Lake Most

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-26
Accession:
SAMEA110380207
ID:
29970327

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