U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERS6344554

Identifiers
BioSample: SAMEA110380134; SRA: ERS12478330
Organism
Akkermansia muciniphila
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; Akkermansia
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-10-01
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMsE-01oct19-136
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-21
ENA-LAST-UPDATE2022-07-21
External IdSAMEA110380134
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-21T20:27:47Z
INSDC last update2022-07-21T20:27:47Z
INSDC statuspublic
Submitter IdMsE-01oct19-136
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score100
completeness softwarecheckm
contamination score0
geographic location (latitude)50.539746
geographic location (longitude)13.645342
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344554
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Verrucomicrobia assembled from Lake Most

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-22
Accession:
SAMEA110380134
ID:
29887460

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center