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ERS6344553

Identifiers
BioSample: SAMEA110380121; SRA: ERS12478317
Organism
Rhizobium sp. Q54
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium; unclassified Rhizobium
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-10-23
environmental mediumfresh water
geographic locationAustria
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMoH-23oct19-208
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110380121
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T16:26:48Z
INSDC last update2022-07-22T16:26:48Z
INSDC statuspublic
Submitter IdMoH-23oct19-208
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score96.52
completeness softwarecheckm
contamination score1.96
geographic location (latitude)47.806248
geographic location (longitude)13.398749
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344553
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Proteobacteria assembled from Lake Mondsee

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110380121
ID:
29916966

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