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ERS4065081

Identifiers
BioSample: SAMEA110379959; SRA: ERS12478155
Organism
Chitinophaga pinensis
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; Chitinophaga
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-04-16
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMiH-16apr19-121
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-21
ENA-LAST-UPDATE2022-07-21
External IdSAMEA110379959
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-21T20:27:46Z
INSDC last update2022-07-21T20:27:46Z
INSDC statuspublic
Submitter IdMiH-16apr19-121
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score90.95
completeness softwarecheckm
contamination score0.54
geographic location (latitude)50.654974
geographic location (longitude)13.948885
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS4065081
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteroidetes assembled from Lake Milada

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-22
Accession:
SAMEA110379959
ID:
29887376

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