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ERS6344551

Identifiers
BioSample: SAMEA110379924; SRA: ERS12478120
Organism
Helicobacter pylori PMSS1
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-10-14
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMiH-14oct19-106
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110379924
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T12:26:15Z
INSDC last update2022-07-22T12:26:15Z
INSDC statuspublic
Submitter IdMiH-14oct19-106
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score97.15
completeness softwarecheckm
contamination score3.79
geographic location (latitude)50.654974
geographic location (longitude)13.948885
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344551
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Proteobacteria assembled from Lake Milada

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110379924
ID:
29916869

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