U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERS6344550

Identifiers
BioSample: SAMEA110379823; SRA: ERS12478019
Organism
Akkermansia muciniphila
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; Akkermansia
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-10-14
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMiE-14oct19-101
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110379823
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T12:26:13Z
INSDC last update2022-07-22T12:26:13Z
INSDC statuspublic
Submitter IdMiE-14oct19-101
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score98.64
completeness softwarecheckm
contamination score1.81
geographic location (latitude)50.654974
geographic location (longitude)13.948885
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344550
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Verrucomicrobia assembled from Lake Milada

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110379823
ID:
29916807

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center