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ERS4065085

Identifiers
BioSample: SAMEA110379769; SRA: ERS12477965
Organism
Chitinophaga pinensis
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; Chitinophaga
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-07-09
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMH-09jul19-22
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110379769
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T12:26:14Z
INSDC last update2022-07-22T12:26:14Z
INSDC statuspublic
Submitter IdMH-09jul19-22
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score88.36
completeness softwarecheckm
contamination score0.03
geographic location (latitude)50.179564
geographic location (longitude)12.584932
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS4065085
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteroidetes assembled from Lake Medard

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110379769
ID:
29916771

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