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ERS4065079

Identifiers
BioSample: SAMEA110379733; SRA: ERS12477929
Organism
Bifidobacterium breve
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-04-08
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMH-08apr19-233
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-21
ENA-LAST-UPDATE2022-07-21
External IdSAMEA110379733
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-21T16:25:28Z
INSDC last update2022-07-21T16:25:28Z
INSDC statuspublic
Submitter IdMH-08apr19-233
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score81.87
completeness softwarecheckm
contamination score3.42
geographic location (latitude)50.179564
geographic location (longitude)12.584932
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS4065079
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Actinobacteria assembled from Lake Medard

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-22
Accession:
SAMEA110379733
ID:
29887277

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