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ERS4065068

Identifiers
BioSample: SAMEA110379534; SRA: ERS12477730
Organism
Sphingomonas paucimobilis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-04-09
environmental mediumfresh water
geographic locationItaly
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMaE-09apr19-17
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-21
ENA-LAST-UPDATE2022-07-21
External IdSAMEA110379534
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-21T16:25:29Z
INSDC last update2022-07-21T16:25:29Z
INSDC statuspublic
Submitter IdMaE-09apr19-17
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score95.29
completeness softwarecheckm
contamination score1.35
geographic location (latitude)45.966667
geographic location (longitude)8.65
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS4065068
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Proteobacteria assembled from Lake Maggiore

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-22
Accession:
SAMEA110379534
ID:
29887174

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