U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERS4065068

Identifiers
BioSample: SAMEA110379533; SRA: ERS12477729
Organism
Chryseobacterium gleum
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-04-09
environmental mediumfresh water
geographic locationItaly
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameMaE-09apr19-167
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-21T16:25:29Z
ENA-LAST-UPDATE2022-07-21T16:25:29Z
External IdSAMEA110379533
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-21T16:25:29Z
INSDC last update2022-07-21T16:25:29Z
INSDC statuspublic
Submitter IdMaE-09apr19-167
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score99.19
completeness softwarecheckm
contamination score3.66
geographic location (latitude)45.966667
geographic location (longitude)8.65
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS4065068
scientific_nameChryseobacterium gleum
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteroidetes assembled from Lake Maggiore

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-22
Accession:
SAMEA110379533
ID:
29887173

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center