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ERS6344545

Identifiers
BioSample: SAMEA110379491; SRA: ERS12477687
Organism
Klebsiella pneumoniae
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-11-05
environmental mediumfresh water
geographic locationItaly
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameLH-05nov19-24
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-21
ENA-LAST-UPDATE2022-07-21
External IdSAMEA110379491
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-21T16:25:28Z
INSDC last update2022-07-21T16:25:28Z
INSDC statuspublic
Submitter IdLH-05nov19-24
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score87.04
completeness softwarecheckm
contamination score2.26
geographic location (latitude)46.009123
geographic location (longitude)9.021579
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344545
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Proteobacteria assembled from Lake Lugano

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-22
Accession:
SAMEA110379491
ID:
29887152

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