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ERS6344545

Identifiers
BioSample: SAMEA110379489; SRA: ERS12477685
Organism
Nitrosomonas ureae
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-11-05
environmental mediumfresh water
geographic locationItaly
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameLH-05nov19-234
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110379489
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T12:26:14Z
INSDC last update2022-07-22T12:26:14Z
INSDC statuspublic
Submitter IdLH-05nov19-234
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score94.26
completeness softwarecheckm
contamination score0.16
geographic location (latitude)46.009123
geographic location (longitude)9.021579
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344545
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Proteobacteria assembled from Lake Lugano

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110379489
ID:
29916640

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