ERS6344542

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Result Filters

Organism: Sphingomonas paucimobilis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-11-07
environmental medium	fresh water
geographic location	Austria
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	GE-07nov19-80
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-21
ENA-LAST-UPDATE	2022-07-21
External Id	SAMEA110379375
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-21T12:15:47Z
INSDC last update	2022-07-21T12:15:47Z
INSDC status	public
Submitter Id	GE-07nov19-80
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	80.25
completeness software	checkm
contamination score	0
geographic location (latitude)	47.350545
geographic location (longitude)	8.677677
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS6344542
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach