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ERS4065075

Identifiers
BioSample: SAMEA110379298; SRA: ERS12477494
Organism
Nannocystis exedens
cellular organisms; Bacteria; Pseudomonadati; Myxococcota; Polyangia; Nannocystales; Nannocystaceae; Nannocystis
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-05-03
environmental mediumfresh water
geographic locationAustria
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameAH-03may19-255
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-25
ENA-LAST-UPDATE2022-07-25
External IdSAMEA110379298
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-25T12:45:16Z
INSDC last update2022-07-25T12:45:16Z
INSDC statuspublic
Submitter IdAH-03may19-255
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score92.37
completeness softwarecheckm
contamination score1.94
geographic location (latitude)47.865613
geographic location (longitude)13.544841
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS4065075
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Proteobacteria assembled from Lake Attersee

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-26
Accession:
SAMEA110379298
ID:
29970308

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