ERS6344540

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Result Filters

Organism: Novosphingobium sp. Chol11
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium; unclassified Novosphingobium

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-10-24
environmental medium	fresh water
geographic location	Austria
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	AE-24oct19-78
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-22
ENA-LAST-UPDATE	2022-07-22
External Id	SAMEA110379280
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-22T12:26:12Z
INSDC last update	2022-07-22T12:26:12Z
INSDC status	public
Submitter Id	AE-24oct19-78
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	98.1
completeness software	checkm
contamination score	2.16
geographic location (latitude)	47.865613
geographic location (longitude)	13.544841
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS6344540
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach