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ERS6344540

Identifiers
BioSample: SAMEA110379260; SRA: ERS12477456
Organism
Spirosoma fluviale
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma
Attributes
broad-scale environmental contextfreshwater lake
collection date2019-10-24
environmental mediumfresh water
geographic locationAustria
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameAE-24oct19-153
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110379260
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-07-22T12:26:12Z
INSDC last update2022-07-22T12:26:12Z
INSDC statuspublic
Submitter IdAE-24oct19-153
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score85.17
completeness softwarecheckm
contamination score0.73
geographic location (latitude)47.865613
geographic location (longitude)13.544841
local environmental contextlake
metagenomic sourcefreshwater metagenome
sample derived fromERS6344540
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteroidetes assembled from Lake Attersee

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110379260
ID:
29916537

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