U.S. flag

An official website of the United States government

Metagenome-assembled genome: BRZ_DM__bin18

Identifiers
BioSample: SAMEA110135749; SRA: ERS12234569
Organism
uncultured Flavonifractor sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor; environmental samples
Attributes
collection date2016
broad-scale environmental contexthost-associated habitat
local-scale environmental contexthost-associated habitat
environmental mediumcaecal content
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameMetaChick
sample nameBRZ_DM__bin18
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2022-06-17
ENA-LAST-UPDATE2022-06-17
External IdSAMEA110135749
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2022-06-17T16:20:19Z
INSDC last update2022-06-17T16:20:19Z
INSDC statuspublic
Submitter IdBRZ_DM__bin18
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.3
binning parametersMetaBAT default parameters
binning softwareMetaBAT v2.12.1
completeness score94.27
completeness softwarecheckm v1.1.3
contamination score1.16
geographic location (latitude)48.8583
geographic location (longitude)2.2923
geographic location (region and locality)Jouy-en-Josas
metagenomic sourcechicken gut metagenome
sample derived fromERS4542220
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542220

BioProject
PRJEB53581
Retrieve all samples from this project

Submission
EBI; 2022-06-18
Accession:
SAMEA110135749
ID:
29195924

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center
External link. Please review our privacy policy.