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Metagenome-assembled genome: E0_DM__bin172

Identifiers
BioSample: SAMEA110133925; SRA: ERS12232745
Organism
uncultured Coriobacteriaceae bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; environmental samples
Attributes
collection date2016
broad-scale environmental contexthost-associated habitat
local-scale environmental contexthost-associated habitat
environmental mediumcaecal content
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameMetaChick
sample nameE0_DM__bin172
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2022-06-17
ENA-LAST-UPDATE2022-06-17
External IdSAMEA110133925
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2022-06-17T16:20:16Z
INSDC last update2022-06-17T16:20:16Z
INSDC statuspublic
Submitter IdE0_DM__bin172
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.3
binning parametersMetaBAT default parameters
binning softwareMetaBAT v2.12.1
completeness score100
completeness softwarecheckm v1.1.3
contamination score1.61
geographic location (latitude)48.8583
geographic location (longitude)2.2923
geographic location (region and locality)Jouy-en-Josas
metagenomic sourcechicken gut metagenome
sample derived fromERS4541992,ERS4541993,ERS4541994,ERS4541995,ERS4541996,ERS4541997,ERS4541998,ERS4541999,ERS4542000,ERS4542001
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS4541992,ERS4541993,ERS4541994,ERS4541995,ERS4541996,ERS4541997,ERS4541998,ERS4541999,ERS4542000,ERS4542001

BioProject
PRJEB53581
Retrieve all samples from this project

Submission
EBI; 2022-06-18
Accession:
SAMEA110133925
ID:
29194100

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