20200310_ Bin_METABAT__161_1-contigs.fa

Organism: uncultured Rhodobacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; environmental samples

Attributes

collection date	2020-03-10
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	coastal sea water [ENVO:00002150]
geographic location	North Sea
investigation type	metagenome-assembled genome
isolation source	marine water
project name	2020 Helgoland Spring Bloom Metagenomes
sample name	ILMN-20200310-m44
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-09-23
ENA-LAST-UPDATE	2022-09-23
External Id	SAMEA110068913
INSDC center alias	Max Planck Institute for Marine Microbiology
INSDC center name	Max Planck Institute for Marine Microbiology
INSDC first public	2022-09-23T08:24:28Z
INSDC last update	2022-09-23T08:24:28Z
INSDC status	public
Submitter Id	ILMN-20200310-m44
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPADES v3.10
binning parameters	anvi'o 6.2, default parameters
binning software	CONCOCT v1.1.0, MaxBin2 v2.2.7, Metabat2 v2.12.1, Binsanity v0.4.4, and integration using DAS_Tool v1.1.2. Manual refinement with anvi'o v6.2
completeness score	76.48
completeness software	CheckM v1.1.3
contamination score	0.53
geographic location (latitude)	54.19
geographic location (longitude)	7.9
metagenomic source	marine metagenome
sample derived from	ERS12037268
sequencing method	Illumina HiSeq 3000
taxonomic identity marker	multi-marker approach (GTDB-tk v1.7, GTDB v202)

Description: seawater was pumped into a 500 L carboy, brought ashore, subsequently filtered through 10 μm - and 3 μm - pore-size polycarbonate filters and finally filtered onto 0.2 μm pore-size polycarbonate filter, frozen at -80°C. This sample refers to the 0.2 - 3 μm fraction

BioSample