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ERS11712860

Identifiers
BioSample: SAMEA110046776; SRA: ERS12043364
Organism
Gulosibacter massiliensis
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Gulosibacter
Attributes
collection date2018-04-20
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB52406
sample nameHRS-ES8-bin-117
ENA first public2023-04-13
ENA last update2023-04-13
ENA-CHECKLISTERC000047
External IdSAMEA110046776
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2023-04-13T16:27:02Z
INSDC last update2023-04-13T16:27:02Z
INSDC statuspublic
Submitter IdHRS-ES8-bin-117
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 49,69,89,109,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score48.61
completeness softwarecheckm
contamination score0.34
geographic location (latitude)48.846361
geographic location (longitude)14.487639
metagenomic sourcefreshwater metagenome
sample derived fromERS11712860
scientific nameGulosibacter sp. Marseille-P7157
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae

BioProject
PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

Submission
EBI; 2023-04-17
Accession:
SAMEA110046776
ID:
34212851

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