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ERS11712897

Identifiers
BioSample: SAMEA110030105; SRA: ERS12044433
Organism
Opitutus sp. GAS368
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Opitutia; Opitutales; Opitutaceae; Opitutus; unclassified Opitutus
Attributes
collection date2018-05-09
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB52406
sample nameHRS-HS13-bin-180
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-13
ENA-LAST-UPDATE2023-04-13
External IdSAMEA110030105
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2023-04-13T16:27:03Z
INSDC last update2023-04-13T16:27:03Z
INSDC statuspublic
Submitter IdHRS-HS13-bin-180
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 49,69,89,109,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score93.82
completeness softwarecheckm
contamination score2.05
geographic location (latitude)48.846361
geographic location (longitude)14.487639
metagenomic sourcefreshwater metagenome
sample derived fromERS11712897
scientific_nameOpitutus sp. GAS368
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae

BioProject
PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

Submission
EBI; 2023-04-17
Accession:
SAMEA110030105
ID:
34212645

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