U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERS11712854

Identifiers
BioSample: SAMEA110029319; SRA: ERS12043116
Organism
Tangfeifania diversioriginum
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Marinilabiliales; Prolixibacteraceae; Tangfeifania
Attributes
collection date2018-04-06
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB52406
sample nameHRS-ES2-bin-408
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-13
ENA-LAST-UPDATE2023-04-13
External IdSAMEA110029319
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2023-04-13T16:27:04Z
INSDC last update2023-04-13T16:27:04Z
INSDC statuspublic
Submitter IdHRS-ES2-bin-408
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 49,69,89,109,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score86.9
completeness softwarecheckm
contamination score3.05
geographic location (latitude)48.846361
geographic location (longitude)14.487639
metagenomic sourcefreshwater metagenome
sample derived fromERS11712854
scientific_nameTangfeifania diversioriginum
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteria; Bacteroidetes; Bacteroidia; Marinilabiliales; Prolixibacteraceae

BioProject
PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

Submission
EBI; 2023-04-17
Accession:
SAMEA110029319
ID:
34212574

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center