Unknown Betaproteobacterium AM_1003

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Result Filters

Organism: Betaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; unclassified Betaproteobacteria

Attributes

isolate	AM_1003
sample name	AM_1003
sample type	metagenomic assembly
ENA first public	2020-02-25
ENA last update	2018-02-26
ENA-CHECKLIST	ERC000011
External Id	SAMEA104651818
INSDC center alias	Universidade Federal de Sao Carlos - UFSCar
INSDC center name	Universidade Federal de Sao Carlos - UFSCar
INSDC first public	2020-02-25T04:07:52Z
INSDC last update	2018-02-26T10:47:54Z
INSDC status	public
Submitter Id	AM_1003
annotation_method	Prokka 1.12
assembly method	Megahit v.1
biosamplemodel	Microbe, viral or environmental
completeness_estimated	95.93
contamination_estimated	0.91
environmental sample	Yes
geographic location (country and/or atlantic ocean)	Brazil
geographic location (region and locality)	Amazon river Downstream section
mapping_method	BWA (BWA-MEM)
metagenomic	TRUE
quality_assessment_method	CheckM
refinement_method	RefineM

Description: Uncultivated unknown Betaproteobacterium AM_1003 genome recovered from a co-assembly of the SRR1790676, SRR1790678, SRR1790679 and SRR1790680 metagenomes.