Xanthomonas fuscans subsp. aurantifolii AM_0519

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Result Filters

Organism: Xanthomonas citri pv. aurantifolii
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas; Xanthomonas citri group; Xanthomonas citri

Attributes

isolate	AM_0519
sample name	AM_0519
sample type	metagenomic assembly
pathovar	aurantifolii
ENA first public	2020-02-25
ENA last update	2018-02-26
ENA-CHECKLIST	ERC000011
External Id	SAMEA104651800
INSDC center alias	Universidade Federal de Sao Carlos - UFSCar
INSDC center name	Universidade Federal de Sao Carlos - UFSCar
INSDC first public	2020-02-25T04:07:52Z
INSDC last update	2018-02-26T10:47:54Z
INSDC status	public
Submitter Id	AM_0519
annotation_method	Prokka 1.12
assembly method	Megahit v.1
biosamplemodel	Microbe, viral or environmental
completeness_estimated	96.74
contamination_estimated	0.07
environmental sample	Yes
geographic location (country and/or atlantic ocean)	Brazil
geographic location (region and locality)	Amazon river Upstream section
mapping_method	BWA (BWA-MEM)
metagenomic	TRUE
quality_assessment_method	CheckM
refinement_method	RefineM