Green_AO.bin.3 metagenome-assembled genome

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Result Filters

Organism: Oscillatoria nigro-viridis PCC 7112
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Oscillatoriaceae; Oscillatoria; Oscillatoria nigro-viridis

Attributes

broad-scale environmental context	Terrestrial biome
collection date	2021-09
environmental medium	Soil
geographic location	Canada
isolation source	Bryophytes in the boreal forest
project name	Boreal moss-microbe interactions are revealed through metagenome assembly of novel bacterial species
sample name	Green_AO.bin.3
ENA first public	2024-12-17
ENA-CHECKLIST	ERC000050
INSDC center name	UdS
INSDC status	public
Submitter Id	Green_AO.bin.3
assembly software	metaSPAdes;3.15.4;-k21,33,55 --only-assembler, default parameters otherwise, MEGAHIT;1.2.9;default parameters, run on reads not assembled by metaSPAdes
binning parameters	Metabat: --metabat_len=1000, Maxbin: -markerset=107, -min_contig_length=1000, CONCOCT: -l 1000
binning software	MetaBAT:2.12.1,CONCOCT:1.1.0,MaxBin:2.2.4,MetaWRAP_bin_refinement:1.110
completeness score	90.64
completeness software	CheckM:1.0.125
contamination score	0.57
geographic location (latitude)	51.7040721
geographic location (longitude)	76.0521982
local environmental context	Vegetation layer
metagenomic source	moss metagenome
sample derived from	ERS20331839
scientific_name	Oscillatoria nigro-viridis PCC 7112