MAG: Novosphingobium sp. 2021-09-21 WE12

Identifiers: BioSample: SAMN45872592; Sample name: Novosphingobium sp. samp_507_VAMB_256

Organism: Novosphingobium sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium; unclassified Novosphingobium

Attributes

collection date	2021-09-21T14:00:00Z
depth	0-5.8 m
broad-scale environmental context	large freshwater lake biome [ENVO:00000891]
local-scale environmental context	Lake [ENVO:00000020]
environmental medium	water [ENVO:00002006]
geographic location	USA: Lake Erie
latitude and longitude	41.70406 N 83.25291 W
isolate	samp_507_VAMB_256
derived from	SAMN45078918
isolation source	lake water
sample type	metagenomic assembly
metagenome source	freshwater metagenome
size-fraction upper threshold	0.22 μm
chlorophyll	21.79 μg/L
soluble reactive phosphorus	2.42 μg/L
particulate organic nitrogen	0.32 mg/L
particulate organic carbon	2.14 mg/L
dissolved organic carbon	6 mg/L
suspended particulate matter	14.72 mg/L
sample collection device or method	peristaltic pump
collection method	peristaltic pump
pH	9.03
SampleID	samp_507
GAZ_id	GAZ:00003932
Completeness (%)	94
Contamination (%)	4.53
Strain heterogeneity (%)	36.67
metagenomic	1
environmental-sample	1
NOAA_Site	WE12
keywords	HABs
depth_at_sampling_location	6.8 m
ext_phyco	11.96 μg/L
tot_phos	51.6 μg/L
diss_phosp	4.49 μg/L
ammonia	5.03 μg/L
Nitrate_Nitrite	0.013
Col_DOM	0.99
suspend_vol_solid	5 mg/L
ice_cover	0 %
modified_or_experimental	False
is_isolate	False
is_blank_neg_control	False
is_mock_community_or_pos_control	False
sky	sunny
wave_height	2.5 ft
sortchem	E2021-2019
nitrate_nitrite	0.013 mg/L
col_dom	0.99 µg/L
h2o2	107 nM
Notes	Issues with calibrating the pH meter, values might not be trustworthy

BioSample