MAG: Novosphingobium sp. 2021-09-21 WE9

Identifiers: BioSample: SAMN45872587; Sample name: Novosphingobium sp. samp_506_semibin_445

Organism: Novosphingobium sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium; unclassified Novosphingobium

Attributes

collection date	2021-09-21T15:17:00Z
depth	0-2 m
broad-scale environmental context	large freshwater lake biome [ENVO:00000891]
local-scale environmental context	Lake [ENVO:00000020]
environmental medium	water [ENVO:00002006]
geographic location	USA: Lake Erie
latitude and longitude	41.7269 N 83.42329 W
isolate	samp_506_semibin_445
derived from	SAMN45078917
isolation source	lake water
sample type	metagenomic assembly
metagenome source	freshwater metagenome
size-fraction upper threshold	0.22 μm
chlorophyll	44.17 μg/L
soluble reactive phosphorus	10.61 μg/L
particulate organic nitrogen	0.68 mg/L
particulate organic carbon	3.61 mg/L
dissolved organic carbon	8 mg/L
suspended particulate matter	29.5 mg/L
sample collection device or method	peristaltic pump
wind speed	12.5 knots
collection method	peristaltic pump
pH	9.03
SampleID	samp_506
GAZ_id	GAZ:00003932
Completeness (%)	95.44
Contamination (%)	2.38
Strain heterogeneity (%)	56.25
metagenomic	1
environmental-sample	1
NOAA_Site	WE9
keywords	HABs
depth_at_sampling_location	3.1 m
ext_phyco	6.95 μg/L
tot_phos	131.46 μg/L
diss_phosp	19.26 μg/L
ammonia	8.62 μg/L
Nitrate_Nitrite	0.022
Col_DOM	1.78
suspend_vol_solid	8.7 mg/L
ice_cover	0 %
modified_or_experimental	False
is_isolate	False
is_blank_neg_control	False
is_mock_community_or_pos_control	False
sky	cloudy
wave_height	1 ft
sortchem	E2021-2018
nitrate_nitrite	0.022 mg/L
col_dom	1.78 µg/L
h2o2	114 nM
Notes	Issues with calibrating the pH meter, values might not be trustworthy

BioSample