MAG: Novosphingobium sp. 2021-09-21 WE2

Identifiers: BioSample: SAMN45872563; Sample name: Novosphingobium sp. samp_505_metabat2_101

Organism: Novosphingobium sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium; unclassified Novosphingobium

Attributes

collection date	2021-09-21T12:35:00Z
depth	0-5 m
broad-scale environmental context	large freshwater lake biome [ENVO:00000891]
local-scale environmental context	Lake [ENVO:00000020]
environmental medium	water [ENVO:00002006]
geographic location	USA: Lake Erie
latitude and longitude	41.76265 N 83.329 W
isolate	samp_505_metabat2_101
derived from	SAMN45078916
isolation source	lake water
sample type	metagenomic assembly
metagenome source	freshwater metagenome
size-fraction upper threshold	0.22 μm
chlorophyll	27.15 μg/L
soluble reactive phosphorus	5.11 μg/L
particulate organic nitrogen	0.32 mg/L
particulate organic carbon	2.39 mg/L
dissolved organic carbon	6 mg/L
suspended particulate matter	15.96 mg/L
sample collection device or method	peristaltic pump
collection method	peristaltic pump
pH	9.16
SampleID	samp_505
GAZ_id	GAZ:00003932
Completeness (%)	99
Contamination (%)	1.49
Strain heterogeneity (%)	63.64
metagenomic	1
environmental-sample	1
NOAA_Site	WE2
keywords	HABs
depth_at_sampling_location	6 m
ext_phyco	7.72 μg/L
tot_phos	65.41 μg/L
diss_phosp	10.72 μg/L
ammonia	16.69 μg/L
Nitrate_Nitrite	0.016
Col_DOM	1.27
suspend_vol_solid	4.84 mg/L
ice_cover	0 %
modified_or_experimental	False
is_isolate	False
is_blank_neg_control	False
is_mock_community_or_pos_control	False
sky	partly cloudy
wave_height	2.5 ft
sortchem	E2021-2016
nitrate_nitrite	0.016 mg/L
col_dom	1.27 µg/L
h2o2	53 nM
Notes	Issues with calibrating the pH meter, values might not be trustworthy

BioSample