MAG: Novosphingobium sp. 2015-08-10 WE14

Identifiers: BioSample: SAMN45872265; Sample name: Novosphingobium sp. samp_450_VAMB_341

Organism: Novosphingobium sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium; unclassified Novosphingobium

Attributes

collection date	2015-08-10T15:42:00Z
depth	0.75 m
broad-scale environmental context	large freshwater lake biome [ENVO:00000891]
local-scale environmental context	Lake [ENVO:00000020]
environmental medium	water [ENVO:00002006]
geographic location	USA: Lake Erie
latitude and longitude	41.7172 N 83.016 W
isolate	samp_450_VAMB_341
derived from	SAMN45078861
isolation source	lake water
sample type	metagenomic assembly
metagenome source	freshwater metagenome
size-fraction upper threshold	0.22 μm
temperature	24.4 °C
dissolved oxygen	9.34 mg/L
conductivity	228.9 μS/cm
turbidity	14.5 NTU
chlorophyll	58.82 μg/L
soluble reactive phosphorus	2.09 μg/L
particulate organic nitrogen	0.6 mg/L
particulate organic carbon	3.14 mg/L
dissolved organic carbon	3.99 mg/L
suspended particulate matter	11.6 mg/L
sample collection device or method	peristaltic pump
wind speed	1.9 knots
collection method	peristaltic pump
SampleID	samp_450
GAZ_id	GAZ:00003932
Completeness (%)	90.54
Contamination (%)	3.65
Strain heterogeneity (%)	47.62
metagenomic	1
environmental-sample	1
NOAA_Site	WE14
keywords	HABs
depth_at_sampling_location	9.49 m
part_microcyst	3.16 μg/L
diss_microcyst	0.14 μg/L
ext_phyco	15.61 μg/L
tot_phos	36.26 μg/L
diss_phosp	5.33 μg/L
ammonia	2.05 μg/L
Nitrate_Nitrite	0.232
Col_DOM	0.87
suspend_vol_solid	6.56 mg/L
ice_cover	0 %
modified_or_experimental	False
is_isolate	False
is_blank_neg_control	False
is_mock_community_or_pos_control	False
attenuation	4.9 m-1
transmission	29 %
par	125 μE/m2/s
sky	cloudy
wave_height	0.33 ft
sortchem	E2015-0032
nitrate_nitrite	0.232 mg/L
col_dom	0.87 µg/L

BioSample