MAG: Novosphingobium sp. 2015-08-10 WE12

Identifiers: BioSample: SAMN45872234; Sample name: Novosphingobium sp. samp_448_VAMB_123

Organism: Novosphingobium sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium; unclassified Novosphingobium

Attributes

collection date	2015-08-10T14:04:00Z
depth	0.75 m
broad-scale environmental context	large freshwater lake biome [ENVO:00000891]
local-scale environmental context	Lake [ENVO:00000020]
environmental medium	water [ENVO:00002006]
geographic location	USA: Lake Erie
latitude and longitude	41.7037 N 83.2553 W
isolate	samp_448_VAMB_123
derived from	SAMN45078859
isolation source	lake water
sample type	metagenomic assembly
metagenome source	freshwater metagenome
size-fraction upper threshold	0.22 μm
temperature	24.2 °C
dissolved oxygen	9.72 mg/L
conductivity	314.5 μS/cm
turbidity	19.7 NTU
chlorophyll	190.08 μg/L
soluble reactive phosphorus	29.38 μg/L
particulate organic nitrogen	0.94 mg/L
particulate organic carbon	4.55 mg/L
dissolved organic carbon	5.85 mg/L
suspended particulate matter	16.13 mg/L
sample collection device or method	peristaltic pump
wind speed	1.8 knots
collection method	peristaltic pump
SampleID	samp_448
GAZ_id	GAZ:00003932
Completeness (%)	93.75
Contamination (%)	5.19
Strain heterogeneity (%)	50
metagenomic	1
environmental-sample	1
NOAA_Site	WE12
keywords	HABs
depth_at_sampling_location	6.6 m
part_microcyst	0.34 μg/L
diss_microcyst	0.1 μg/L
ext_phyco	302.41 μg/L
tot_phos	300.05 μg/L
diss_phosp	85.52 μg/L
ammonia	2.75 μg/L
Nitrate_Nitrite	1.098
Col_DOM	3.32
suspend_vol_solid	8.14 mg/L
ice_cover	0 %
modified_or_experimental	False
is_isolate	False
is_blank_neg_control	False
is_mock_community_or_pos_control	False
attenuation	6 m-1
transmission	22.6 %
par	12 μE/m2/s
sky	cloudy
wave_height	0.26 ft
sortchem	E2015-0030
nitrate_nitrite	1.098 mg/L
col_dom	3.32 µg/L

BioSample