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Metagenome-assembled genome: SRP199465_co2_865

Identifiers
BioSample: SAMEA117291839; SRA: ERS22359374
Organism
uncultured Erysipelotrichaceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples
Attributes
broad-scale environmental contexthost
collection date2017
environmental mediumhost
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcegut metagenome
project nameThe first goal is to establish a shotgun metagenome database of Illumina paired-end reads from the prairie vole (Microtus ochrogaster) from multiple individuals housed in the same colony (within-colony gamma diversity). This will be used as the basis for taxonomic assignment of the most abundant strains from individual animals before and after treatment with inoculation strains. Microbiome alteration is one of the phenotypes to be assayed in animals treated with inoculum. The other phenotypes to be assayed are behavior and neurochemical.
sample nameSRP199465_co2_865
ENA first public2024-12-11
ENA-CHECKLISTERC000047
INSDC center nameCMR
INSDC statuspublic
Submitter IdSRP199465_co2_865
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes;3.15.4;default
binning parameterscoverage and kmer
binning softwareVAMB;3.0.2;default
completeness score89.84
completeness softwareCheckM2;1.0.2;default
contamination score1.04
geographic location (latitude)30.4449951
geographic location (longitude)-84.3023827
local environmental contextgut biome
metagenomic sourcegut metagenome
sample derived fromSAMN08875415,SAMN11853144
scientific_nameuncultured Erysipelotrichaceae bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9122728,SRR9335148 of study SRP199465.

BioProject
PRJEB82487 Bin Chicken Rare Biosphere Genomes
Retrieve all samples from this project

Submission
EBI; 2024-12-12
Accession:
SAMEA117291839
ID:
45802999

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