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CDC Sars CoV2 Sequencing Baseline Constellation

Identifiers
BioSample: SAMN45107336; SRA: SRS23400699; CDC-OAMD: SARS-CoV-2/Human/USA/NY-CDC-LC1125576/2024
Organism
Severe acute respiratory syndrome coronavirus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus
Package
SARS-CoV-2: clinical or host-associated; version 1.0
Attributes
isolateSARS-CoV-2/Human/USA/NY-CDC-LC1125576/2024
collected byLaboratory Corporation of America
collection date2024-11-12
isolation sourceNasal Swabs
geographic locationUSA: New York
hostHomo sapiens
host diseaseCOVID-19
host sexfemale
host age50
collection deviceNasal Swabs
collection method Nasal Swabs
purpose of sequencingbaseline surveillance (random sampling)
host_raceUnknown
diagnostic_gene_name_1N1 gene
diagnostic_pcr_protocol_1Labcorp LDT
diagnostic_pcr_Ct_value_122.797
diagnostic_gene_name_2N2 gene
diagnostic_pcr_protocol_2Labcorp LDT
diagnostic_pcr_Ct_value_220.148
diagnostic_gene_name_3RP gene
diagnostic_pcr_protocol_3Labcorp LDT
diagnostic_pcr_Ct_value_331.65
lineage/clade nameKP.3.1.1
Submission
CDC-OAMD; 2024-11-30
Accession:
SAMN45107336
ID:
45107336

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