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ERS11624240

Identifiers
BioSample: SAMEA110021492; SRA: ERS12066557
Organism
Caulobacter sp. UNC279MFTsu5.1
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter; unclassified Caulobacter
Attributes
collection date2005-08-01
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-ZL8A6-452-5-mx-bin849
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-05-24T00:31:14Z
ENA-LAST-UPDATE2024-05-24T00:31:14Z
External IdSAMEA110021492
INSDC center nameBiology Centre CAS
INSDC first public2024-05-24T00:31:14Z
INSDC last update2024-05-24T00:31:14Z
INSDC statuspublic
Submitter IdJJ-ZL8A6-452-5-mx-bin849
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score99.68
completeness softwarecheckm
contamination score0.32
geographic location (latitude)50.08709255
geographic location (longitude)13.1275044
metagenomic sourcefreshwater metagenome
sample derived fromERS11624240
scientific_nameCaulobacter sp. UNC279MFTsu5.1
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-ZL8A6-452-5-mx-bin849 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter

Submission
EBI; 2024-07-25
Accession:
SAMEA110021492
ID:
42826425

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