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ERS11624215

Identifiers
BioSample: SAMEA110042465; SRA: ERS12066405
Organism
Nannocystis exedens
cellular organisms; Bacteria; Pseudomonadati; Myxococcota; Polyangia; Nannocystales; Nannocystaceae; Nannocystis
Attributes
collection date2020-09-30
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-SDA7-351-1-m1-bin419
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-05-24T00:31:33Z
ENA-LAST-UPDATE2024-05-24T00:31:33Z
External IdSAMEA110042465
INSDC center nameBiology Centre CAS
INSDC first public2024-05-24T00:31:33Z
INSDC last update2024-05-24T00:31:33Z
INSDC statuspublic
Submitter IdJJ-SDA7-351-1-m1-bin419
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score95
completeness softwarecheckm
contamination score1.77
geographic location (latitude)49.36102568
geographic location (longitude)14.02339702
metagenomic sourcefreshwater metagenome
sample derived fromERS11624215
scientific_nameNannocystis exedens
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-SDA7-351-1-m1-bin419 - Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales

Submission
EBI; 2024-07-25
Accession:
SAMEA110042465
ID:
42814737

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