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Metagenome-Assembled Genome: SRR16279914_bin.37_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114121912; SRA: ERS16102637
Organism
Phocaeicola coprocola
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
Attributes
broad-scale environmental contextHuman digestive system
collection date2019-05-01/2020-10-30
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameParkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation.
sample nameSRR16279914_bin.37_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-20T12:20:55Z
ENA-LAST-UPDATE2023-07-20T12:20:55Z
External IdSAMEA114121912
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-20T12:20:55Z
INSDC last update2023-07-20T12:20:55Z
INSDC statuspublic
Submitter IdSRR16279914_bin.37_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score97.76
completeness softwareCheckM
contamination score0.19
geographic location (latitude)37.51
geographic location (longitude)122.12
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMN22185133
scientific_namePhocaeicola coprocola
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__Phocaeicola;s__Phocaeicola coprocola
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16279914 of study SRP340671.

BioProject
PRJEB63522
Retrieve all samples from this project

Submission
EBI; 2023-07-22
Accession:
SAMEA114121912
ID:
36681328

BioProject Nucleotide

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