U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome: SRR3962771_bin.3_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA112958504; SRA: ERS14953925
Organism
Maritimibacter alkaliphilus
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Maritimibacter
Attributes
broad-scale environmental contextAquatic
collection date2011-05-15
environmental mediumDeep Atlantic Ocean
geographic locationPacific Ocean
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameMarine microbial communities from the Deep Pacific Ocean - MP1896 metagenome
sample nameSRR3962771_bin.3_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-25
ENA-LAST-UPDATE2023-04-25
External IdSAMEA112958504
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-04-25T00:21:16Z
INSDC last update2023-04-25T00:21:16Z
INSDC statuspublic
Submitter IdSRR3962771_bin.3_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score58.92
completeness softwareCheckM
contamination score3.73
geographic location (latitude)21.06
geographic location (longitude)-150.35
local environmental contextMarine
metagenomic sourcemarine metagenome
sample derived fromSAMN05422140
scientific_nameMaritimibacter alkaliphilus
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Roseobacteraceae;g__Maritimibacter;s__Maritimibacter alkaliphilus
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenome-assembled genome assembled from the metagenomic run SRR3962771 of study SRP080035.

BioProject
PRJEB26126
Retrieve all samples from this project

Submission
EBI; 2023-04-29
Accession:
SAMEA112958504
ID:
34438552

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center